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1. Privoxy
Privoxy is a web proxy with advanced filtering capabilities for protecting privacy, modifying web page content, managing cookies, controlling access, and removing ads, banners, pop-ups and other obnoxious Internet junk.
Development Status: Production/Stable
License: GNU General Public License (GPL)
Operating System: Windows, Linux
2. Tiger UNIX security tool
The Tiger security tools were originally developed to provide a check of UNIX systems on the Texas A&M campus that wanted to be accessed from off campus (clearance through the packet filter). As such, the TAMU group needed something that anyone could run to test the security of a system if they could figure out how to get it down to their machine. It was written around the same time that Cops, SATAN and ISS's Internet Scanner was. Eventually, and after 2.2.4 was released (around 1994), development on Tiger stopped.
Development Status: Production/Stable
License: GNU General Public License (GPL)
Operating System: OS Independent
3. cryptmount
cryptmount is a utility for GNU/Linux operating systems which allows an ordinary user to mount an encrypted filing system without requiring superuser priveleges. It is aimed at recent Linux systems using the 2.6 kernel series.
Development Status: Production/Stable
License: GNU General Public License (GPL)
Operating System: Linux
4. Samhain - File system integrity checker
Samhain is a multiplatform, open source solution for centralized file integrity checking / host-based intrusion detection on POSIX systems (Unix, Linux, Cygwin/Windows).
Development Status: Production/Stable
License: GNU General Public License (GPL)
Operating System: Linux
5. KeePass Password Safe 
KeePass Password Safe is a free, open source, light-weight and easy-to-use password manager for Windows. You can store your passwords in a highly-encrypted database, which is locked with one master password or key file.
Development Status: Production/Stable
License: GNU General Public License (GPL)
Operating System: WINE, 32-bit MS Windows (95/98), 32-bit MS Windows (NT/2000/XP), All 32-bit MS Windows (95/98/NT/2000/XP), Win2K, WinXP, Microsoft Windows Server 2003