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Link Indexing 
1. MyThreads-Links
MyThreads-Links is a flexible web based links manager that looks similar to Yahoo but was written in PHP and uses MySQL. MyThreads-Links uses PHPLib Templates so that its very simple for anyone to change the look and feel of the program without having to edit the code.
Development Status: Production/Stable
License: GNU General Public License (GPL)
Operating System: Platform Independent
2. Skalinks Links Management Script
SkaLinks was created for arranging link categories with use of reciprocal links exchange concept. Features: links exchange; categories hierarchy; virtual categories; related categories; admin panel; customizable settings; statistics display; broken links verification; fast-to-customize interface.
Development Status: Not Available
License: Other/Proprietary License
Operating System: Linux/Unix, Windows
3. Plugboard
Plugboard is a small and simple script that allows users to post a button link on your site. Features include IP logging, domain banning, IP banning, set image size, flood control and no double plugs. Keep your visitors coming back.
Development Status: Production/Stable
License: GNU General Public License (GPL)
Operating System: Windows, Linux
4. Yet Another Link Directory
Yet another link directory (YALD) is a simple yet powerful and efficient link directory/index program written in PHP with a MySQL backend. YALD also features easily customizable templates and unlimited subcategories.
Development Status: Production/Stable
License: GNU General Public License (GPL)
Operating System: All 32-bit MS Windows (95/98/NT/2000/XP), All POSIX (Linux/BSD/UNIX-like OSes)
5. TG Referrers
Automatically tracks referrers to your website. It is completely customizable with detailed statistical analysis, an approval system, secure administration control panel and best of all - its FREE! FEATURES Secure administration control panel - completely manage your referrals without editing text files Approval System - you control what sites display on your trade list (keep the spammers out!) Customizable - completely customize your website referrers - including a short list, random list, and full list. Activity Logging - ban log and approval log Quick Links - One-click approval, ban and un-ban Detailed referral statistics - see exactly where the traffic is coming from Aliases - Give all your sites friendly names with ease CSS integration - simply apply a CSS stlye name to change the display of your referrals list Alignment - control the alignment of each column of referral data independantly Tracking Days - easily change the number of days to track referrals Traffic - show incoming and outcoming hits to your site
Development Status: Production/Stable
License: Freeware
Operating System: Linux
6. OpenLD
OpenLD is an open and free link-directory. Some features are: SEO-friendly urls, a plugin engine and an easy install.
Development Status: Production/Stable
License: GNU General Public License (GPL)
Operating System: OS Independent (Written in an interpreted language)
7. qlWebDS - Web Directory Software
qlWebDS Web Directory Script offers unique tools and features. Deep links, banner rotator, ad placement right through admin, 5 languages, meta fetch, instant sub-category creation, 9 link choices, 11 templates, optional auto approvals, free and paid premium version. Written in PHP for MySQL.
Development Status: Mature
License: GNU General Public License (GPL)
Operating System: linux, windows, freebsd, osx, sun