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E-Commerce 
1. ShopCMS
ShopCMS is an advanced paypal shopping cart, catalog manager and CMS. It supports full paypal shopping cart integration, customizable templates, runs on the mySQL database, has parent and subcategories with multi-level navigation controls, works with mod_perl, php version available, and MUCH MORE.
Development Status: Production/Stable
License: GNU General Public License (GPL)
Operating System: Platform Independent
2. Interchange - Free e-commerce system
Interchange is a complete ecommerce storefront management system. It can create, automate and database-enable your web-site, and build on-line applications. It can be used as part of a standalone system or as part of a larger system. It supports sales, order processing, content management, customer service, and has been implemented for traditional retail sales, digital goods delivery, B2B parts re-ordering, non-commerce content management, auctions, order status checking, and supply chain management (among others). It can be integrated with payment processing services, ERP systems, point-of-sale systems, accounting systems, external content management systems, and Java-based application servers (among others).
Development Status: Production/Stable
License: GNU General Public License (GPL)
Operating System: OS Independent (Written in an interpreted language)
3. AllCommerce - E-commerce/content application
This application provides a Web-based administrator to access inventory and order information. Modules include content, order, inventory and promotions. It's written in Perl and supports MySQL, PostgreSQL or Oracle.
Development Status: Production/Stable
License: GNU General Public License (GPL)
Operating System: 32-bit MS Windows (NT/2000/XP), All 32-bit MS Windows (95/98/NT/2000/XP), All POSIX (Linux/BSD/UNIX-like OSes), Linux, Solaris, Win2K, WinXP
4. Freeside
Open-source billing, ticketing and automation for ISPs and online businesses.
Development Status: Production/Stable
License: GNU General Public License (GPL)
Operating System: linux, freebsd, osx, sun
5. Skinny Cart
A cookie-based ecommerce cart, Skinny Cart takes simple form input, calculates total weights, quantity and price of ordered goods; calculates simple postage costs, accepts credit card inputs and uses email to notify both the customer and purchaser that a purchase has been made. SSL is available via a SSL-capable server.
Development Status: Production/Stable
License: GNU General Public License (GPL)
Operating System: Linux, Sun, FreeBSD