Category: Unix Shell - Miscellaneous

exome_test.sh is a shell script to run GATK best practice and varscan for variant-calling in exomseq. It uses bwa for alignment, UnifiedGenotyper and varscan to call variants, and Annovar to annotate. It also employs DepthofCoverage and BAM-readcount. Date: 21 June, 2016

Homepage: https://sourceforge.net/projects/exome-test/?source=directory


License: Freeware

Operating System: Not Available

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